Image-Processing-MATLAB

Acquired time lapse images from the IncuCyte® and processed with MATLAB to create a time-lapse video of one particular aggregate of bacteria

This project is maintained by JD2112

Image acquisition from live cell image instrument (IncuCyte®) and processed in MATLAB to acquire desired frames and export into a video format.

Reuired files

  1. Sequential images from the IncuCyte® should be in the local folder

Run the code

1. open the code file (mcode.m) in MATLAB
2. Run it in MATLAB console
3. The code will prompt to select the folder (where you saved the images)
4. DONE!

Movie 1 🎬

Video with MATLAB processing inset only Watch the Video

Movie 2 🎬

Video with insets of MATLAB processing and Growth Curves Wathc the Video

Citation:

*Kalsum, S., Andersson, B., Das, J. et al. A high-throughput screening assay based on automated microscopy for monitoring antibiotic susceptibility of *Mycobacterium tuberculosis phenotypes. BMC Microbiol 21, 167 (2021). Find full article here