Tutorial: ShinyOlink¶
ShinyOlink is a user-friendly Shiny application designed to simplify the analysis of Olink proteomics data. It allows users to upload their raw data, then performs various statistical tests and generates interactive visualizations by leveraging the specialized OlinkAnalyze R package, making complex bioinformatics accessible to researchers. The project uses a modular design and has automated deployment pipelines for efficient delivery and maintenance.
Visual Overview¶
flowchart TD
A0["Shiny Application Structure"]
A1["Module-Based Development"]
A2["Data Ingestion & Preparation"]
A3["OlinkAnalyze Package Integration"]
A4["Reactive Programming"]
A5["Statistical Analysis & Visualization Modules"]
A6["Automated Deployment Pipelines"]
A7["Project Governance & Contributions"]
A0 -- "Composed of Modules" --> A1
A0 -- "Underpins Application Logic" --> A4
A1 -- "Implements Functionality" --> A5
A1 -- "Manages Data Upload" --> A2
A2 -- "Provides Reactive Data" --> A4
A2 -- "Supplies Data For" --> A5
A3 -- "Provides Analysis Functions" --> A5
A4 -- "Enables Dynamic Outputs" --> A5
A6 -- "Automates Deployment" --> A0
A7 -- "Governs Deployment" --> A6
A7 -- "Guides Module Design" --> A1